NanoComp report

Summary statistics

General summary: barcode11 barcode12 unclassified barcode01 barcode08 barcode04 barcode02 barcode07 barcode09 barcode03 barcode10 barcode06 barcode05
Active channels: 242.0 230.0 218.0 16.0 16.0 17.0 29.0 19.0 16.0 18.0 12.0 17.0 16.0
Mean read length: 1,647.2 1,452.2 1,483.2 1,018.1 1,374.5 1,353.2 1,744.4 1,503.0 1,471.5 2,047.6 1,615.7 964.3 1,486.2
Mean read quality: 8.0 8.0 5.3 5.0 5.3 5.1 5.1 5.4 5.2 5.6 5.0 5.0 5.0
Median read length: 1,219.0 1,008.5 993.0 793.5 1,106.0 863.5 1,098.0 1,307.5 1,324.5 932.0 1,181.0 703.0 1,058.0
Median read quality: 8.2 8.1 5.0 4.8 4.8 5.1 4.9 5.2 5.2 4.9 5.1 5.1 4.4
Number of reads: 12,783.0 5,692.0 2,685.0 18.0 17.0 20.0 33.0 22.0 20.0 22.0 13.0 19.0 16.0
Read length N50: 2,336.0 2,013.0 2,234.0 1,499.0 1,763.0 1,894.0 2,463.0 1,995.0 1,777.0 4,607.0 2,571.0 1,605.0 2,510.0
Total bases: 21,055,523.0 8,266,183.0 3,982,482.0 18,326.0 23,367.0 27,064.0 57,564.0 33,067.0 29,430.0 45,048.0 21,004.0 18,321.0 23,779.0
Number, percentage and megabases of reads above quality cutoffs
>Q5:12405 (97.0%) 20.5Mb5505 (96.7%) 8.0Mb1321 (49.2%) 1.9Mb7 (38.9%) 0.0Mb8 (47.1%) 0.0Mb11 (55.0%) 0.0Mb16 (48.5%) 0.0Mb13 (59.1%) 0.0Mb12 (60.0%) 0.0Mb10 (45.5%) 0.0Mb7 (53.8%) 0.0Mb10 (52.6%) 0.0Mb7 (43.8%) 0.0Mb
>Q7:9748 (76.3%) 16.6Mb4232 (74.3%) 6.4Mb383 (14.3%) 0.6Mb1 (5.6%) 0.0Mb2 (11.8%) 0.0Mb2 (10.0%) 0.0Mb3 (9.1%) 0.0Mb2 (9.1%) 0.0Mb1 (5.0%) 0.0Mb5 (22.7%) 0.0Mb1 (7.7%) 0.0Mb0 (0.0%) 0.0Mb2 (12.5%) 0.0Mb
>Q10:1065 (8.3%) 2.0Mb429 (7.5%) 0.8Mb16 (0.6%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb
>Q12:11 (0.1%) 0.0Mb1 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb
>Q15:0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1:13.1 (5045; 01f26b18-75ed-4e72-87ee-a74f1202dc94)12.1 (533; 03240cbf-1665-49cd-93e5-6c5559fe688a)11.9 (1248; 03ac446c-1e62-4c8d-b4ed-8cc96219a98c)8.0 (498; 076fe8a1-41cf-4758-b6d7-5099d8e38351)9.0 (1456; 20f74024-8e0b-42e3-a1b1-260ede1abfc4)8.0 (295; 5dad8c7b-4a6b-48c1-a28c-cbd7af0c4afe)8.2 (1035; 3b4f0c88-4602-4b69-a2da-6b4d18437435)7.8 (2783; 864754ad-dde9-4d57-b899-233738fcdc73)7.2 (2224; e1de5db6-a9b4-426e-94be-9e6a7fce672b)9.7 (861; 32dbe3aa-f70b-41d0-bc1f-4fff8b53e198)7.8 (2673; 0b69c685-9d33-4a34-8c1c-f2314476ee0a)6.4 (375; 4470b2b1-b40a-47c0-a044-5013bea78598)8.2 (289; 8517c500-3edb-4d37-a05f-ccb9f5626819)
2:12.6 (2895; 87e337b5-01f3-40b1-ac0f-43b9c711c676)11.9 (509; a1de3705-9477-4e8c-8f7d-bcd602360da8)11.3 (1582; ea99ec73-4abb-44ca-b375-a8e3d9d7a386)6.8 (565; d718561f-82f9-40c4-93d7-96456a7d7fc9)7.4 (1882; 909da83e-e1d2-4c75-8380-0ebe77a13828)7.5 (664; 25505a1c-66c2-49cf-83cd-ffd6c415226a)7.5 (2014; 49219118-97d7-470e-ad99-bade7ddc1b46)7.2 (1424; 35bb9b46-1abc-4b4a-ac23-3fd740d9134f)6.9 (768; 59a9b86a-0cc5-4c3d-8050-e37dcd174c41)8.1 (820; 95ef6fb9-76ae-4518-a8e8-bb421c9c84dd)6.0 (544; 59edb11b-188d-42d4-8710-0951b3e78917)6.1 (1605; 16f38715-0456-497d-840f-a3ba58e86717)8.1 (1717; 6b230700-3347-42a9-9464-2a454bb5d4fe)
3:12.5 (4040; 54376d93-fdde-4ebf-a26d-ba7c2dcf4f6d)11.8 (1078; 84cb3d3a-7a7c-4b1a-999e-6d120e29a598)10.7 (1167; 57716b29-db4a-4f2c-9d03-0a6d9ea4e30f)6.6 (834; 4fa0444a-7be6-437b-b64b-75498079dfdf)6.6 (192; cfb939b0-8447-4edf-8601-f885ad6cbfca)7.0 (1123; 8365ad7a-e41f-4a9f-8dea-d1fd69641d90)7.2 (2074; e78d6eb7-d55f-4581-8273-a7eea1e3a2dd)6.7 (5055; c483166e-7870-4a83-b7b3-8bac480b160a)6.8 (3566; 863052f5-d97d-443b-96e9-2010273077a7)7.8 (4622; b32fc428-3de1-4431-88dd-b9123ace3ab8)5.4 (1741; 685e5ef9-b6be-41bf-8856-626a380cf3e1)6.1 (162; 0505983c-0eb7-4b62-93a4-18c441bb57fc)5.9 (226; 9efdb2f1-5ae4-4462-b562-8b8786207f23)
4:12.4 (1606; 60498683-5238-4d16-945d-c90fa1be4bac)11.8 (2407; e1c64a9e-76da-4892-a676-887563ddbeae)10.7 (1473; f5df7e73-9213-4a27-b400-40fd682717b9)5.7 (753; a5c22465-ac20-4c9d-a548-1f89c2f91740)6.1 (867; e8337d5f-cf8e-424c-a50f-2688ac35b158)6.5 (749; 52932792-9b8f-4291-b8e5-67e71515ab63)6.8 (4441; 25e94182-e545-4501-8c98-d4ae585f6614)6.4 (1491; c031d64d-412d-4557-95ac-fad0d7174fe0)6.4 (413; 2707134f-3e7b-4022-b915-694cc1a186d3)7.7 (458; 4e72c4a4-b606-45b2-afef-4c3b1bd88588)5.4 (926; 777e6d74-f702-483c-be61-382e37e36e0c)5.9 (2322; 5f08cb3c-fe64-436f-97e9-5a7993aa46f3)5.6 (3573; b69034de-ce78-4a47-b2b1-10c0d035525e)
5:12.3 (574; a046a983-e980-4aec-a59f-572516595d44)11.8 (1087; 402e12d5-4533-4a68-bd90-1f0c293b35ac)10.5 (599; 2e59f771-eb0b-4547-be58-6448028e72ab)5.6 (3186; 56e65600-ab88-4af3-8dfc-9855bf3d56e0)6.0 (2283; 90065f4b-d6e3-4bd0-ba6e-232658a9196e)6.2 (4989; b6889440-b05e-44b7-8d86-fed617786fdd)6.6 (393; 16a0dbab-3938-4f04-927d-61a8df2e6c0a)6.3 (863; 13d6950d-0010-4c7d-b6a6-2d133800338c)6.0 (1777; 14b4c0d7-68a2-4e99-9d03-a1498473436d)7.3 (790; 0deb9d54-85cb-40e4-8dc8-112271cfe6ec)5.3 (142; 0c2a4abc-ceac-4ce8-b844-f2cfb881518d)5.3 (524; 14583dfa-c4be-4026-8560-9b736732450d)5.5 (1870; 8bec517c-b8cc-4951-a39f-2cfba6871d5c)
Top 5 longest reads and their mean basecall quality score
1:8836 (9.6; 2c1ebcc4-f6f1-4bd0-8c44-4522e525c705)10185 (6.5; 072b589b-fe23-4647-bcd7-fb860a7f748b)22666 (3.4; a186acb5-ba17-41c8-828e-49d12b8d7e7f)3186 (5.6; 56e65600-ab88-4af3-8dfc-9855bf3d56e0)2908 (4.2; 02f74ad2-4dba-4298-a48b-20554496a19e)4989 (6.2; b6889440-b05e-44b7-8d86-fed617786fdd)7529 (4.5; 779954fc-4d70-4737-8722-a01c8e64aecc)5055 (6.7; c483166e-7870-4a83-b7b3-8bac480b160a)3566 (6.8; 863052f5-d97d-443b-96e9-2010273077a7)6326 (4.3; f43e3d7d-3c39-4890-8c4e-16f2d8f8279b)6306 (4.8; 3b1dd028-bdfd-4057-bb1f-17517ab42c85)2912 (5.1; d6620c02-09c3-49fe-baab-9b249f38bfac)3585 (4.2; 83b2902a-1b62-4883-aebb-894f03c39726)
2:8425 (8.9; fc36bb20-0790-42c3-8f15-154cd39bce92)9276 (9.7; 2afdf98e-a971-41a0-ba4b-517958e036a6)14611 (3.5; 655e07ec-45ac-4ac6-a89f-ff1efbb17d58)1830 (4.0; 7aa5e173-9a5f-47f2-865b-33f68a8b415d)2479 (4.6; cab94e39-6bd6-4f29-8d7e-06443e203b40)2777 (3.6; ee69d89e-5a62-4305-807b-681cc7b5490a)6561 (3.4; ce768b00-eb7e-48e4-a631-1b18febd82fe)3184 (5.8; e90dcc69-c66f-4228-9adc-ab7d64434fff)2899 (4.9; 6b71b8a0-4242-482a-a8d6-b6a866a06c93)5213 (4.0; bb393097-dced-4868-8f64-90a71bdddcdc)2673 (7.8; 0b69c685-9d33-4a34-8c1c-f2314476ee0a)2661 (4.5; a1377821-fe80-4e6c-9706-f8950155f45d)3573 (5.6; b69034de-ce78-4a47-b2b1-10c0d035525e)
3:8247 (8.3; 32309ef0-eb74-4406-8958-570fbc8a723c)9054 (10.0; a11d4753-db26-4bb7-8ee7-8643cc8f314b)8700 (4.0; cda79166-42ae-4f7c-a4f4-096f5d12f61d)1644 (5.3; 267d57c4-c439-4981-8cf2-ebae3d042159)2283 (6.0; 90065f4b-d6e3-4bd0-ba6e-232658a9196e)2496 (4.0; 2f4c5996-e027-496b-9bfb-8b44170ac4bd)4441 (6.8; 25e94182-e545-4501-8c98-d4ae585f6614)2783 (7.8; 864754ad-dde9-4d57-b899-233738fcdc73)2639 (5.6; 34d5bbb3-9565-42df-9b66-97dbf77c464f)4793 (4.3; 05196ce7-d69c-4c3d-b4dd-032908f5b60a)2571 (4.0; 88a53483-64b9-4b30-bc20-730631468c38)2322 (5.9; 5f08cb3c-fe64-436f-97e9-5a7993aa46f3)2573 (3.7; 1db6311f-d640-47d7-8406-35fc46b7b9df)
4:8232 (11.1; 0e2e9026-f2af-4d68-a01a-4b6c52b026a8)8800 (7.0; 9d5fbd13-eef6-419f-abc6-9e2f7c83c130)8095 (7.3; be888e21-d241-40e9-a970-11bd6ef554da)1506 (4.1; 20be683b-6ba5-49bc-b9c1-d0948a6a8009)2031 (3.7; 0e602dd0-f7f1-49b3-acab-7d59d7a6920c)2431 (5.2; b7dcbeef-a81b-4dd0-8026-5711992f2735)4162 (3.9; d04fc439-8b54-4f4f-9956-14e41bf22485)2579 (3.3; 4369f8c5-3a9c-42b4-b2d8-6f7a827bd1ce)2348 (4.6; bbfc4fa3-0da6-46e6-add4-4db1a26907cb)4622 (7.8; b32fc428-3de1-4431-88dd-b9123ace3ab8)1959 (5.3; 676928cd-2fbe-4d34-aab1-ad986b25806b)1605 (6.1; 16f38715-0456-497d-840f-a3ba58e86717)2510 (3.9; 672a5572-1daa-4f26-9f5a-dfa203711872)
5:8226 (9.2; d146e5ac-6575-4b52-a3b8-7375a27e6177)8637 (6.7; 91c962d4-1ae3-4f5a-98c5-cde49a2f4a2a)8002 (3.6; 2ecaf5d2-c384-4181-9fd8-420ec02f6868)1499 (5.0; 557b19d6-e796-4c1d-a750-056a6074ff71)1882 (7.4; 909da83e-e1d2-4c75-8380-0ebe77a13828)1894 (5.9; 45237b0d-1b49-46bd-adc3-6e26c792a6e2)3199 (6.2; 7b2dd78a-4ea1-4770-bb4d-9def37d42ad1)2563 (5.0; 07206c34-65c5-4257-be4e-83f51fb04467)2224 (7.2; e1de5db6-a9b4-426e-94be-9e6a7fce672b)4607 (6.0; af4da727-adb5-4531-88bb-617e396569e6)1741 (5.4; 685e5ef9-b6be-41bf-8856-626a380cf3e1)1336 (5.2; cab1009c-277d-422f-9db1-06b533e12851)2314 (4.2; 85633e37-6313-444c-8e94-fd464133309e)




Plots

Comparing number of reads





Comparing throughput in gigabases sequenced





Comparing lengths





Comparing log length





Comparing base call quality scores





Cumulative yield





Histogram of read lengths





Normalized histogram of read lengths





Histogram of log transformed read lengths





Normalized histogram of log transformed read lengths